Yes, Auto FTP Manager can start a transfer when there is a folder change.
Add a new schedule for transferring files on a folder change. Auto FTP Manager will check the selected folder on the time interval you select. If there are any changes within the folder, the file transfer will begin.
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Read more about the On Folder change schedule:
https://www.deskshare.com/help/afm/ScheduledProfiles.aspx