When upgrading to latest version all your profiles will be transferred automatically. There was a change in the Profile definitions in version 3.5. If you have an older version than 3.5 you will need to upgrade profiles using the Import Profiles feature of Auto FTP Manager. Only Quick Connect Profiles can be imported. All other profile types need to be re-created. Refer to the following page in the help guide: Importing Profiles You do not need to do anything before upgrading. All you have to do is run the setup. Exisiting versions automatically get unistalled when you install the upgrade.