You can use the File Filters in Auto FTP Manager to upload only the files of specific extensions.
To configure a filter, right click on the profile name in the left side panel and select the Edit Profile option. Go to the Automated Transfer settings page, click on the Configure button under the File and Folder Filters section. Select the File type filter option, choose the ‘.html’ file extension and click on the Include button. Save the changes.
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Whenever you start the automated transfer, only the html files on the FTP folder will be updated. You can add more extensions to the list, if you want to include more file types.
Further you can add a schedule to start the transfer process automatically at a specified time.